Tag: phylogeny

T’s Apothecary

Specimen collection.

Environmental Science students have been working on a wide range of term projects. They’re required to use real data. Some are using the long term weather, climate and socioeconomic records from national and international data repositories. Others are collecting their own measurements — the ability to connect temperature, pH, and conductivity sensors to the new calculators have proven invaluable.

One project that I’ve been particularly happy that someone has taken up, because of its potential future use, has been to assemble a specimen collection cataloging the vegetative biodiversity in the area around the creek. With the help of TFS parent Scott Woodbury, who works for the Missouri Botanical Gardens, she’s collected, identified, and preserved dozens of specimens. She’s also compiled them all into an online phylogenetic tree (using mind42) that should serve as a wonderful reference for future class and student projects.

Life in Four Domains

The four domains of life, according to Boyer et al. (2010).

This wonderful, impressionistic image shows representatives of the three domains of life and large viruses, the proposed fourth.

This figure represents the living species in the four small pictures according to the current classification of organisms: eukaryotes (represented by yellow cell), bacteria (represented by green cell), Archaea (represented by blue cell) and viruses (represented by magenta colored Mimivirus).

— Boyer et al. (2010): Boyer M, Madoui M-A, Gimenez G, La Scola B, Raoult D (2010) Phylogenetic and Phyletic Studies of Informational Genes in Genomes Highlight Existence of a 4th Domain of Life Including Giant Viruses. PLoS ONE 5(12): e15530. doi:10.1371/journal.pone.0015530

Carl Zimmer has an excellent piece in Discover Magazine that summarizes the research, and sets out the new tree of life. Particularly important, is the fact that viruses can transfer genes with each other. The other domains tend to mix their genes during reproduction.

Tree of Life Project

Tree of Life web project.

The Tree of Life web project is a growing online collaborative project to:

to contain a page with pictures, text, and other information for every species and for each group of organisms, living or extinct.

Direwolf distribution in the U.S. from Faunmap.

It’s a great starting point for looking at the tree of life because each page has links to a wealth of online resources. One of the links on the Mammalia page, for example, is to Faunmap, an online database that produces maps of where different modern and extinct mammalian species can be found in the United States.

All the pages on the Tree of Life website are linked by the branches of the tree of life. The Class Mammalia links up to its parent Therapsida and down to the its Orders such as Monotremata (one of my favorites) and Eutheria, the placenta mammals.

The site is authored by professional scientists and science educators so has that credibility. Most of the images also allow free, non-commercial use. Thanks to Anna C. for the link.