Origin of life lab

ENSI has a set of great labs that can be used all the way from the middle school to the university level. They deal with the nature of science, the origin of life, evolution and genetics/DNA. (Thanks again Anna Clarke for the link.)

Amoeba (image from Wikipedia). This image is part of a neat video of amoeba movement.

I’m thinking that the Creating Coacervates lab, the only one on the origin of life section, might fit into my orientation cycle plans. Coacervates are small, microscopic blobs of fat (lipids) that look like, and have many of the same properties as cells, amoebas in particular. They can be produced with simple chemicals. One of the key things I’d like to start the year with, is the idea that:

complex life-like cell-like structures can be produced naturally from simple materials with simple changes. Flammer, 1999.

These abiotic blobs can be compared to the protozoans in a water droplet sample while we learn how to use the microscopes. It also ties into the Miller–Urey experiments that produced amino acids using electricity and simple compounds: water, methane, ammonia and hydrogen gas. The Miller-Urey experiments will pop up later when we read Frankenstein.

Sarajevo roses

Sarajevo rose. (Image from Wikipedia)

Mortar shells landing on concrete create a pattern almost like a floral arrangement. In Sarajevo, after the Bosnian War, the mortar scars in the sidewalks were filled in with red resin. The results are called Sarajevo Roses.

Flickr has a nice map that links to Rose pictures in downtown Sarajevo.

I found out about these from reading a recent set of View From Your Window Contest entries on Andrew Sullivan’s blog.

Oil does not come from dinosaurs.

Phytoplankton (image from NASA).

There’s a nice article in the New York Times on the fact that oil, petroleum, did not come form dead dinosaurs, but rather from the microscopic plankton that died and fell to the ocean floor.

The idea that oil came from the terrible lizards that children love to learn about endured for many decades. The Sinclair Oil Company featured a dinosaur in its logo and in its advertisements, and outfitted its gas stations with giant replicas that bore long necks and tails. The publicity gave the term “fossil fuels” new resonance. – Broad, 2010

It’s easy to forget how pervasive is the idea that oil comes from dinosaurs. Broad’s article is a nice reminder that:

Today, a principal tenet of geology is that a vast majority of the world’s oil arose not from lumbering beasts on land but tiny organisms at sea. It holds that blizzards of microscopic life fell into the sunless depths over the ages, producing thick sediments that the planet’s inner heat eventually cooked into oil. It is estimated that 95 percent or more of global oil traces its genesis to the sea. – Broad, 2010

How do we know?

[I]n the 1930s. Alfred E. Treibs, a German chemist, discovered that oil harbored the fossil remains of chlorophyll, the compound in plants that helps convert sunlight into chemical energy. The source appeared to be the tiny plants of ancient seas. – Broad, 2010

Phytoplankton bloom off the Carolina coast. (Image from NASA).

We tend to find a lot of oil in the deltas of the great rivers because the rivers provide nutrients for the microorganisms to survive and layers of sand and clay sediments that trap the oil and natural when they’re produced.

The article also ties the location of oil production to the geography of plate tectonics.

[W]hen Africa and South America slowly pulled apart in the Cretaceous period, forming the narrow beginnings of the South Atlantic. Big rivers poured in nutrients. A biological frenzy on the western shores of the narrow ocean ended up forming the vast oil fields now being discovered and developed off Brazil in deep water. – Broad, 2010

Went fishing

We went fishing yesterday and one of us caught our first fish. I tend to dislike dissection for dissection’s sake, at least with middle schoolers, but I believe that cleaning fish is a practical life exercise everyone should have that accomplishes the same thing. There is also an ethical dimension for anyone who eats meat. I have no opposition to cleaning anything else if we’re willing to eat it.

So we’ll probably be cooking fish this year. There aren’t many places to purchase whole fish in Memphis so we’ll probably end up doing it during our immersions. An article on the ethics of vegetarianism might also make a good basis for a Socratic dialogue.

10,000 hours of deliberate practice

10,000 hours of deliberate practice is what it takes for great achievement. That’s a lot of time to put in on anything, especially if you’re constantly pushing yourself to improve, which is necessary for the 10,000 hour rule to work. You’d better be really interested in what you’re working on.

Michael Nielson has a slightly different take. He points out a number of people, like Werner Heisenberg who discovered quantum mechanics, who did not spend that much time on the specific subject. Instead, they had focused on broad background in subjects that they were interested in and were able to apply that expertise in one specific domain. So instead of dedicating 10,000 hours to on subject:

[P]ick a set of skills that you believe are broadly important, and that you enjoy working on, a set of skills where deliberate practice gives rapid intrinsic rewards. Work as hard as possible on developing those skills, but also explore in neighbouring areas, and (this is the part many people neglect) gradually move in whatever direction you find most enjoyable and meaningful. The more enjoyable and meaningful, the less difficult it will be to put in the time that leads to genuine mastery. – Nielson, 2010

However, he does point out that if you were really interested in a particular subject, like being a concert pianist, you should probably put in the hours.

Heisenberg also came up with his famous uncertainty principle. (Image by Kahoun on Wikimedia Commons).

On having good conversations

Conversation, c. 1881. by French Impressionist Camille Pissarro. (Picture from Wikimedia Commons).

[A]s a general rule, conversations about how people have or will interact are interesting, and conversations about objects are dull. So steer toward topics that involve human perceptions and feelings, and away from objects and things. – Scott Adams, 2010.

Scott Adams, the cartoonist behind Dilbert, has some good thoughts on having a good conversation and active listening.

You’ve heard of the Kevin Bacon game, where every actor is just a few connections away from Kevin Bacon. Likewise, you almost always have something interesting in common with every other person. The trick is to find it. As with the Kevin Bacon game, you’d be surprised at how few questions it takes to get there.

To teach effectively, you need to speak the same language

An interesting research project has shown that the same parts of the brain light up when you’re telling a story as when you’re listening to the story. So much so, that you begin to anticipate and parts of the your brain actually light up before the same parts in the storyteller’s. And the greater the synchronization, the greater the recall of the story.

The researchers found considerable synchronization between Silbert’s brain-activation patterns and those of her listeners as the story unfolded. For example, as Silbert spoke about her prom experience, the same areas lit up in her brain as in the brains of her listeners. In most brain regions, the activation pattern in the listeners’ brains came a few seconds after that seen in Silbert’s brain. But a few brain areas, including one in the frontal lobe, actually lit up before Silbert’s, perhaps representing listeners’ anticipating what she was going to say next, the team says. – Balter, 2010

That’s fascinating enough, but the control of their experiment was to have listeners listen to a story in a language they did not know. There was not the same synchronization. This means, if we extrapolate a little, that the amount of language comprehension determines how much you learn from a conversation, or hearing a story, or listening to a lecture, or even for understanding a set of oral instructions.

So if you want students to remember something you need to speak in their language. Language here refers not just to English versus Russian or whatever, but speaking using common idioms that the student is, like, you know, familiar with.

What Video Games Have to Teach Us about Learning and Literacy, by James Paul Gee

James Paul Gee has written a lot about this type of communication, and what it means for learning. He argues that meaning is situated, that is, how we understand something that is said to us depends a lot on our previous history and experiences. The most effective communication only really occurs within communities that have shared the same, or similar, experiences.

We are as teachers, of course, trying to expand student’s ability to use language, and introduce them to the language of different communities. But we should probably pay attention to how we speak in different contexts, and speak in their language when we want them to really remember something.

It all depends on your point of view

Over the winter, we read Brian Swimme’s The Hidden Heart of the Cosmos as part of the HMC Montessori Training Program. Swimme is one of those people trying to reconcile science and religion, or at least some type of spirituality.

He argues that crass commercialism, embodied by the consumer culture and a lot of television that is excrescent and dis-empowering, has replaced the spirituality that our ancestors sought in the dark, quiet reaches of the night. Then they had the time to contemplate the meaning of life and their place and even purpose in the universe. Now we try to respond to a rapidly changing world with no time to consider the fundamental questions.

I tend to be a bit skeptical about just how useful it is to examine the intersection of the sacred and the scientific. The scientific perspective is a powerful way of looking at the world. Spirituality seems to be one of those fundamental needs of human beings. I’ve never found it difficult to see the wonder in the natural world around me (which is why things like texture photography fascinate me). But when we try to describe the natural world in terms of religion and spirituality, I get a bit uncomfortable. When you’re treading the boundary between what we can observe objectively and what we feel subjectively, it’s all to easy to slip between one and the other. To stretch the scientific truth to accommodate the poetic language or metaphor. And so, it’s the little things that end up bugging me to no end.

Copernicus revolutionized the way western civilization viewed the world and itself, Swimme notes. The Earth was no longer at the center of the universe. The Sun did not revolve around us, we revolved around it. So when you see the Sun going down at sunset, it’s not really going down, the Earth is turning away. Except that it is and it isn’t. If the Earth is rotating you away from the Sun, or if the Sun in going down past the horizon, is just a matter of your point of view.

If you want to describe the motion of the planets, the easiest model to construct is one where the Sun is the stationary reference point at the center of the solar system. But, if you were a glutton for punishment, you could write the equations of motion such that the you were the stationary reference point and everything else moved relative to you. It’s a bit like thinking about yourself on a boat floating down a stream. To an observer sitting on the bank you are moving downstream, but to you, the guy on the bank is moving and you’re staying in the same place.

So I get a little agitated when Swimme points out how remarkable it is to think about the fact that we occupy such a small place in such a large universe. He argues that it should broaden your perspective on the universe, and open your mind to larger questions. But I find it just as remarkable, or perhaps even a little more so, to consider the world where I am not moving, and everything else is spinning in some ridiculously complicated dance around me.

I think of Swimme at times when I’m trying to model solute transport through a fluid. Should I try to follow the motion of individual particles with the fluid. Should I take the broader view of the flow through the system. Or should I try to mix the two approaches. Either way, the math should give the same result, since I’m just trying to describe the same thing from different point of view (of course the problem is in how compatible the different approaches are to being programmed).

I know I’m missing the main point of the Hidden Heart of the Cosmos here because of my own hang-ups, so I’ll post an excellent video interview of Brian Swimme by Bob Wright, the author of Nonzero, so he can better explain himself. (If you can’t get the video to play, you can read the transcript.)